One of the issues I'm running into today is trying to save the source estimates after they are calculated. The apply_inverse_epochs() function takes approximately 5 minutes every time I run it, which is just long enough to be inconvenient when trying to my code. The method stc.save() automatically looks for vertices in the left and right hemispheres and saves each hemisphere separately. However, the volume sources don't show up in the list of left and right hemisphere vertices. In order to save them, I will either have to edit the save function, or edit the combined source space so that subcortical volume vertices are stored as left or right hemisphere vertices.
More on this next week.
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